6LFH
X-ray crystal structure of chemically synthesized human lysozyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | LIQUID ANODE |
Source details | Excillum MetalJet D2+ 70 kV |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-05 |
Detector | DECTRIS PILATUS3 R 1M |
Wavelength(s) | 1.34 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.950, 56.410, 61.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.610 - 1.460 |
R-factor | 0.1634 |
Rwork | 0.162 |
R-free | 0.19570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2nwd |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (v1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.610 | 30.610 | 1.500 |
High resolution limit [Å] | 1.460 | 6.540 | 1.460 |
Rmerge | 0.045 | 0.031 | 0.704 |
Rmeas | 0.047 | 0.032 | 0.838 |
Total number of observations | 182201 | ||
Number of reflections | 19745 | 262 | 1051 |
<I/σ(I)> | 31.37 | 59 | 2.03 |
Completeness [%] | 96.9 | 96.3 | 69.5 |
Redundancy | 9.228 | 10.21 | 3.352 |
CC(1/2) | 1.000 | 0.999 | 0.724 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 298 | Lysozyme sample (14 mg/mL) in 2.5 mM HEPES, 0.12 M lithium chloride mixed with reservoir solution containing 30 mM sodium phosphate, 2.5 M sodium chloride |