6LDY
Structure antibody D6 in complex with methylated peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-23 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 41.520, 76.210, 79.210 |
Unit cell angles | 85.58, 84.20, 76.03 |
Refinement procedure
Resolution | 40.180 - 1.770 |
R-factor | 0.1864 |
Rwork | 0.185 |
R-free | 0.21810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ldv |
RMSD bond length | 0.012 |
RMSD bond angle | 1.727 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.180 | 1.870 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.087 | 0.517 |
Rpim | 0.056 | 0.335 |
Number of reflections | 88438 | 12726 |
<I/σ(I)> | 8.4 | 2.1 |
Completeness [%] | 96.9 | 95.3 |
Redundancy | 3.3 | 3.3 |
CC(1/2) | 0.993 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.2 M Calcium chloride 20% PEG3350 |