6LAX
the mutant SAM-VI riboswitch (U6C) bound to SAM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-07-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.892, 86.942, 93.626 |
Unit cell angles | 90.00, 99.19, 90.00 |
Refinement procedure
Resolution | 45.303 - 2.700 |
R-factor | 0.1912 |
Rwork | 0.189 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6las |
RMSD bond length | 0.009 |
RMSD bond angle | 1.158 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.142 | 0.073 | 0.929 |
Rmeas | 0.158 | 0.081 | 1.029 |
Rpim | 0.068 | 0.035 | 0.435 |
Number of reflections | 19609 | 951 | 971 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 97.5 | 90.2 | 99.5 |
Redundancy | 5.2 | 5.3 | 5.3 |
CC(1/2) | 0.996 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | sodium acetate trihydrate, polyethylene glycol 4,000 |