6L8G
High resolution structure of YoeB in complex with YefM C-terminus(46N-83V) from Staphylococcus aureus.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 31.206, 58.117, 65.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.500 - 1.000 |
R-factor | 0.1683 |
Rwork | 0.168 |
R-free | 0.17580 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.754 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.020 |
High resolution limit [Å] | 1.000 | 1.000 |
Rmerge | 0.038 | 0.175 |
Rmeas | 0.040 | 0.187 |
Rpim | 0.011 | 0.063 |
Number of reflections | 64910 | 3023 |
<I/σ(I)> | 61.6 | 12.9 |
Completeness [%] | 99.3 | |
Redundancy | 11.8 | |
CC(1/2) | 1.000 | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 5% v/v Tacsimate pH 7.0 0.1 M HEPES pH 7.0 10% w/v Polyethylene glycol monomethyl ether 5,000 |