6L7Q
Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97943 |
Spacegroup name | H 3 |
Unit cell lengths | 86.278, 86.278, 62.438 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.956 - 1.160 |
R-factor | 0.192 |
Rwork | 0.192 |
R-free | 0.20480 |
Structure solution method | SAD |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.10.1_2155) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.956 | 50.000 | 1.180 |
High resolution limit [Å] | 1.160 | 2.850 | 1.160 |
Rmerge | 0.052 | 0.043 | 0.267 |
Rmeas | 0.060 | 0.045 | 0.304 |
Rpim | 0.020 | 0.015 | 0.140 |
Number of reflections | 51395 | 3188 | 3000 |
<I/σ(I)> | 24.1 | ||
Completeness [%] | 85.7 | 78.7 | 73.3 |
Redundancy | 6.2 | 9.3 | 3.1 |
CC(1/2) | 0.999 | 0.744 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 295 | 0.1M Tris (pH 8.5), 0.05M Magnesium sulfate, 1.8M Ammonium sulfate |