6L2O
Crystal structure of the R.PabI(Y68F-K154A)-dsDNA(GTAC-5bp-GTAC) complex
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-17A |
| Synchrotron site | Photon Factory |
| Beamline | BL-17A |
| Temperature [K] | 95 |
| Detector technology | PIXEL |
| Collection date | 2017-03-06 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.98 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 82.429, 82.429, 140.345 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 41.210 - 2.200 |
| R-factor | 0.2186 |
| Rwork | 0.217 |
| R-free | 0.25720 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5iff |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.623 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 46.780 | 46.780 | 2.270 |
| High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
| Rmerge | 0.070 | 0.048 | 0.852 |
| Rmeas | 0.074 | 0.051 | 0.924 |
| Rpim | 0.023 | 0.017 | 0.349 |
| Total number of observations | 4175 | 16404 | |
| Number of reflections | 28711 | 477 | 2449 |
| <I/σ(I)> | 14.4 | 38 | 1.7 |
| Completeness [%] | 100.0 | 99.3 | 99.9 |
| Redundancy | 10.1 | 8.8 | 6.7 |
| CC(1/2) | 0.999 | 0.999 | 0.832 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.3 | 293 | 0.1 M Bis-Tris pH 6.3, 51% MPD |
