6L08
Crystal structure of Arabidopsis cytidine deaminase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97918 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 112.644, 112.644, 111.585 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.637 - 2.999 |
R-factor | 0.2508 |
Rwork | 0.249 |
R-free | 0.28460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1af2 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.838 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.110 |
High resolution limit [Å] | 2.990 | 6.460 | 3.000 |
Rmerge | 0.066 | 0.024 | 1.380 |
Rmeas | 0.069 | 0.025 | 1.454 |
Rpim | 0.022 | 0.008 | 0.450 |
Number of reflections | 16815 | 1774 | 1667 |
<I/σ(I)> | 13.7 | ||
Completeness [%] | 99.7 | 98.7 | 99.9 |
Redundancy | 9.8 | 8.5 | 10.4 |
CC(1/2) | 0.999 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277.15 | 0.1 M MES sodium salt pH6.5, 2.0 M ammonium sulfate, 5% (w/v) PEG 400 and 0.1 M TCEP hydrochloride |