6KV1
Structure of wild type closed form of peptidoglycan peptidase ZN SAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 58.087, 58.087, 152.516 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.387 - 1.722 |
R-factor | 0.2189 |
Rwork | 0.217 |
R-free | 0.25990 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.750 |
High resolution limit [Å] | 1.720 | 4.670 | 1.720 |
Rmerge | 0.120 | 0.087 | 0.681 |
Rmeas | 0.121 | 0.088 | 0.691 |
Rpim | 0.020 | 0.015 | 0.113 |
Total number of observations | 1141822 | ||
Number of reflections | 32441 | 1781 | 1597 |
<I/σ(I)> | 14.6 | ||
Completeness [%] | 99.9 | 98.4 | 100 |
Redundancy | 35.2 | 34.8 | 35.3 |
CC(1/2) | 0.997 | 0.951 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 10% 2-propanol, 100 mM citrate at pH 5.5, and 20 % PEG4000 |