6KRF
An X-ray structure of ferric F43Y/F46S sperm whale myoglobin in complex with guaiacol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-15 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.980 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.794, 48.558, 78.595 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.780 - 1.860 |
R-factor | 0.1736 |
Rwork | 0.172 |
R-free | 0.20520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iks |
RMSD bond length | 0.011 |
RMSD bond angle | 2.712 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.910 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.116 | 0.793 |
Rpim | 0.048 | 0.427 |
Number of reflections | 13245 | 884 |
<I/σ(I)> | 19.21 | 2.19 |
Completeness [%] | 99.8 | |
Redundancy | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Sodium acetate trihydrate, 0.1 M Sodium cacodylate trihydrate pH 6.5, 30% w/v Polyethylene glycol 8,000 |