6KOQ
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-12 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9789 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 126.846, 161.097, 129.551 |
Unit cell angles | 90.00, 117.44, 90.00 |
Refinement procedure
Resolution | 36.512 - 3.353 |
R-factor | 0.2224 |
Rwork | 0.221 |
R-free | 0.26010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zx3 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.410 |
High resolution limit [Å] | 3.350 | 9.080 | 3.350 |
Rmerge | 0.144 | 0.037 | 0.979 |
Rmeas | 0.159 | 0.040 | 1.114 |
Rpim | 0.067 | 0.017 | 0.518 |
Total number of observations | 348311 | ||
Number of reflections | 64492 | 3347 | 2811 |
<I/σ(I)> | 4.6 | ||
Completeness [%] | 97.7 | 98.9 | 85 |
Redundancy | 5.4 | 5.3 | 4.2 |
CC(1/2) | 0.998 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.08 M magnesium acetate, 0.05 M sodium cacodylated pH 6.5, 15% PEG 400 |