6KKI
Crystal structure of Drug:Proton Antiporter-1 (DHA1) Family SotB, in the inward-occluded conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.778, 84.698, 88.188 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.360 - 3.064 |
R-factor | 0.2412 |
Rwork | 0.238 |
R-free | 0.27070 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 3.160 |
High resolution limit [Å] | 3.050 | 6.550 | 3.050 |
Rmerge | 0.101 | 0.066 | 0.597 |
Rmeas | 0.112 | 0.073 | 0.673 |
Rpim | 0.046 | 0.030 | 0.306 |
Total number of observations | 54555 | ||
Number of reflections | 10188 | 1108 | 986 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 99.6 | 99.1 | 99.4 |
Redundancy | 5.4 | 5.8 | 4.6 |
CC(1/2) | 0.996 | 0.530 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.6 | 297 | 11% PEG 3350, 0.02 M sodium citrate pH 5.6 |