Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6KK8

XN joint refinement of manganese catalase from Thermus Thermophilus HB27

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]293
Detector technologyPIXEL
Collection date2017-03-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.98
Spacegroup nameP 21 3
Unit cell lengths133.396, 133.396, 133.396
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution14.384 - 2.349
R-factor0.1536
Rwork0.152
R-free0.19100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2v8u
RMSD bond length0.007
RMSD bond angle1.261
Refinement softwarePHENIX ((1.13_2998))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.5002.4301.390
High resolution limit [Å]1.3702.3501.370
Rmerge0.0920.7420.956
Rpim0.0300.3810.365
Number of reflections164892145248188
<I/σ(I)>25.71.41.8
Completeness [%]100.097100
Redundancy9.84.48.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.22931.95 M Ammonium Sulfate d-8, 14.5v/v% ethylenglycol, 50 mM AMPSO buffer pD 9.6. Drop: 32 mg/mL of manganese catalase was mixed with equal volume of Reservoir.
1VAPOR DIFFUSION, SITTING DROP8.22931.95 M Ammonium Sulfate d-8, 14.5v/v% ethylenglycol, 50 mM AMPSO buffer pD 9.6. Drop: 32 mg/mL of manganese catalase was mixed with equal volume of Reservoir.

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon