6KID
Crystal structure of human leucyl-tRNA synthetase, ATP-bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 273 |
Detector technology | PIXEL |
Collection date | 2019-04-12 |
Detector | DECTRIS EIGER2 X 4M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 137.224, 137.224, 433.321 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.890 - 3.150 |
R-factor | 0.2473 |
Rwork | 0.245 |
R-free | 0.29260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wz2 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.010 |
High resolution limit [Å] | 2.960 | 8.020 | 2.960 |
Rmerge | 0.170 | 0.051 | 0.409 |
Rmeas | 0.202 | 0.056 | 0.543 |
Rpim | 0.106 | 0.022 | 0.352 |
Total number of observations | 230992 | ||
Number of reflections | 82644 | 4636 | 3251 |
<I/σ(I)> | 5 | ||
Completeness [%] | 88.5 | 98.4 | 70.6 |
Redundancy | 2.8 | 5.6 | 1.6 |
CC(1/2) | 0.999 | 0.001 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M HEPES (pH 7.1), 0.42 M Ammonium sulfate, 24 % PEG3350 |