6KGN
LSD1-CoREST-S2116 N5 adduct model
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-10 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.000 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 120.451, 178.696, 235.256 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.130 - 2.620 |
R-factor | 0.1755 |
Rwork | 0.175 |
R-free | 0.19440 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.912 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.130 | 2.670 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmeas | 0.091 | 1.563 |
Rpim | 0.033 | 0.562 |
Number of reflections | 76266 | 4451 |
<I/σ(I)> | 15.7 | 1.6 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.6 | 7.6 |
CC(1/2) | 0.998 | 0.734 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M N-(carbamoylmethyl)iminodiacetic acid (pH 5.5), 1.28 M potassium sodium tartrate |