6KG1
NifS from Helicobacter pylori, soaked with L-cysteine for 180 sec
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 102.900, 102.900, 133.200 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.180 - 2.700 |
R-factor | 0.1829 |
Rwork | 0.180 |
R-free | 0.23140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wt2 |
RMSD bond length | 0.015 |
RMSD bond angle | 2.926 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.180 | 49.180 | 2.800 |
High resolution limit [Å] | 2.700 | 10.000 | 2.700 |
Rmerge | 0.083 | 0.046 | 0.783 |
Rmeas | 0.090 | 0.049 | 0.842 |
Total number of observations | 265780 | ||
Number of reflections | 20267 | 734 | 3868 |
<I/σ(I)> | 14.18 | 34.17 | 2.28 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 7.086 | 6.77 | 7.329 |
CC(1/2) | 0.998 | 0.997 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 17% (w/v) PEG 4000, 8.5% (v/v) 2-propanol, 15% (v/v) glycerol, 85mM HEPES-NaOH |