6KG0
NifS from Helicobacter pylori, soaked with L-cysteine for 118 sec
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.200, 103.200, 134.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.200 - 2.780 |
R-factor | 0.1854 |
Rwork | 0.184 |
R-free | 0.22140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wt2 |
RMSD bond length | 0.013 |
RMSD bond angle | 2.186 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.200 | 46.200 | 2.800 |
High resolution limit [Å] | 2.700 | 10.000 | 2.700 |
Rmerge | 0.083 | 0.046 | 0.783 |
Rmeas | 0.090 | 0.049 | 0.842 |
Total number of observations | 265780 | ||
Number of reflections | 18835 | 734 | 3868 |
<I/σ(I)> | 14.18 | 34.17 | 2.28 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 7.086 | 6.77 | 7.329 |
CC(1/2) | 0.998 | 0.997 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 17% (w/v) PEF 4000, 8.5% (v/v) 2-propanol, 15%(v/v) glycerol, 85mM HEPES-NaOH |