6KFD
Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with iodoacetate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-24 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.1 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 58.091, 58.091, 225.456 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.310 - 1.550 |
R-factor | 0.16545 |
Rwork | 0.165 |
R-free | 0.17891 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kfa |
RMSD bond length | 0.007 |
RMSD bond angle | 1.275 |
Data reduction software | XDS (0.48) |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.2.08) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.310 | 1.630 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.066 | 0.624 |
Rmeas | 0.069 | 0.663 |
Rpim | 0.022 | 0.223 |
Number of reflections | 34029 | 4822 |
<I/σ(I)> | 25.1 | 4.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 17.9 | 16.6 |
CC(1/2) | 1.000 | 0.956 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 0.2 M ammonium sulfate, 0.1 M sodium acetate (pH 5.0), 28-32% (w/v) PEG monomethyl ether 2000, 0.3 M NDSB-195 |