6KDQ
Crystal structure of human NRMT1 in complex with alpha-N-monomethylated human CENP-A peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-31 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 114.724, 65.790, 69.003 |
Unit cell angles | 90.00, 106.54, 90.00 |
Refinement procedure
Resolution | 28.229 - 1.499 |
R-factor | 0.1586 |
Rwork | 0.158 |
R-free | 0.18030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cvd |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14rc3_3206) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.530 |
High resolution limit [Å] | 1.499 | 4.070 | 1.500 |
Rmerge | 0.077 | 0.065 | 0.361 |
Rmeas | 0.089 | 0.074 | 0.436 |
Rpim | 0.044 | 0.034 | 0.240 |
Number of reflections | 77499 | 3983 | 3794 |
<I/σ(I)> | 13.6 | ||
Completeness [%] | 98.3 | 98.1 | 97.3 |
Redundancy | 3.4 | 4.5 | 3.1 |
CC(1/2) | 0.990 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.7 | 291 | 0.2M Ammonium acetate, 0.1M Sodium citrate dehydrate pH 5.7, 31% w/v PEG 4000 |