6KCX
Crystal structure of citrate complex of alpha-glucuronidase (TM0752)from Thermotoga maritima
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-06-01 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 74.420, 80.410, 89.050 |
Unit cell angles | 90.00, 102.10, 90.00 |
Refinement procedure
Resolution | 40.205 - 1.933 |
R-factor | 0.1432 |
Rwork | 0.141 |
R-free | 0.18430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vjt |
RMSD bond length | 0.005 |
RMSD bond angle | 0.734 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.1.26) |
Phasing software | PHASER (2.5.5) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.540 | 43.540 | 1.970 |
High resolution limit [Å] | 1.930 | 8.830 | 1.930 |
Rmerge | 0.076 | 0.032 | 0.362 |
Rmeas | 0.083 | 0.035 | 0.399 |
Rpim | 0.033 | 0.014 | 0.166 |
Total number of observations | 232326 | 2527 | 12142 |
Number of reflections | 38318 | 426 | 2221 |
<I/σ(I)> | 18.2 | 43.4 | 4.8 |
Completeness [%] | 98.6 | 99 | 80.6 |
Redundancy | 6.1 | 5.9 | 5.5 |
CC(1/2) | 0.998 | 0.999 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 12 % PEG 3350, 0.2 M trilithium citrate, 0.1 M imidazole, pH 5.8, 2-propanol |