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6K9D

glycoside hydrolase family 12 (GH12) englucanase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL15A1
Synchrotron siteNSRRC
BeamlineBL15A1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-01-04
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.00919
Spacegroup nameP 43 21 2
Unit cell lengths88.631, 88.631, 123.411
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution55.879 - 1.505
R-factor0.1738
Rwork0.173
R-free0.18620
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.806
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX ((1.14_3260: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]55.8794.279
High resolution limit [Å]1.5051.505
Number of reflections6264023
<I/σ(I)>1.34
Completeness [%]80.0
Redundancy4.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298.15NfEG12A-N18Y was concentrated to 10 mg/ml in a buffer containing 100 mM citric acid-Na2HPO4 (pH 7.2). both proteins were crystallized in a mother liquid with 0.1 M citrate (pH 5.0) and 16% (w/v) PEG 20000 using the hanging drop vapor diffusion method in 24-well plates. NfEG12A-N18Y crystals was transferred to a reservoir solution supplemented with 25% (v/v) ethylene glycol to grown. Obtained crystals were cryoprotected with 25% (v/v) 2-methyl-2,4-pentanediol. The crystals were mounted on a nylon loop and cooled immediately in liquid nitrogen prior to data collection.

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PDB entries from 2024-05-15

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