6K2O
Structural basis of glycan recognition in globally predominant human P[8] rotavirus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 113 |
Detector technology | CCD |
Collection date | 2018-12-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97852 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 80.454, 80.454, 116.593 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.711 - 2.296 |
R-factor | 0.2049 |
Rwork | 0.203 |
R-free | 0.23310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jdb |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.296 | 2.300 |
Rmerge | 0.159 | 0.860 |
Number of reflections | 10510 | 10510 |
<I/σ(I)> | 22.524 | 4.889 |
Completeness [%] | 100.0 | |
Redundancy | 25.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1M Sodium acetate trihydrate pH 4.5, 2.0M ammonium sulfate |