6K2M
Crystal structure of the complex of Proliferating Cell Nuclear Antigen from Leishmania donovani with arginine at 3.19 A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-08 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 135.926, 150.588, 171.009 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 106.630 - 3.190 |
R-factor | 0.17011 |
Rwork | 0.167 |
R-free | 0.22695 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6j0j |
RMSD bond length | 0.008 |
RMSD bond angle | 1.727 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 106.630 | 3.240 |
High resolution limit [Å] | 3.190 | 3.190 |
Rmerge | 0.053 | 0.653 |
Rmeas | 0.060 | 0.732 |
Rpim | 0.028 | 0.323 |
Number of reflections | 58894 | 2924 |
<I/σ(I)> | 16.3 | 2.2 |
Completeness [%] | 99.4 | 99.8 |
Redundancy | 4.6 | 5 |
CC(1/2) | 0.999 | 0.752 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 20% PEG 3350, sodium malonate |