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6K1C

Crystal structure of EXD2 exonuclease domain soaked in Mg and dGMP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]100
Detector technologyPIXEL
Collection date2016-10-31
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97950
Spacegroup nameP 21 21 21
Unit cell lengths46.304, 73.989, 133.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.151 - 2.450
R-factor0.2168
Rwork0.214
R-free0.27590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6k17
RMSD bond length0.004
RMSD bond angle0.917
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.490
High resolution limit [Å]2.4502.450
Rmerge0.1010.532
Number of reflections17599862
<I/σ(I)>16.19
Completeness [%]99.9
Redundancy4.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277PEG 8000, 2-(N-morpholino)ethanesulfonic acid, Calcium acetate, Dithiothreitol, Magnesium chloride, Deoxyguanosine monophosphate

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