6K04
Crystal structure of BRD2(BD2)with ligand BY27 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97852 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 31.835, 52.424, 71.288 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.234 - 1.251 |
R-factor | 0.169 |
Rwork | 0.168 |
R-free | 0.19170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dvv |
RMSD bond length | 0.006 |
RMSD bond angle | 1.019 |
Data reduction software | HKL-3000 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.234 | 1.296 |
High resolution limit [Å] | 1.251 | 1.251 |
Rmerge | 0.070 | 0.327 |
Rmeas | 0.073 | 0.340 |
Rpim | 0.021 | 0.094 |
Number of reflections | 33653 | 3239 |
<I/σ(I)> | 34.96 | 55.29 |
Completeness [%] | 99.8 | |
Redundancy | 6.6 | 12.6 |
CC(1/2) | 0.992 | 0.971 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.2M ammonium sulfate, 25% PEG 4000 |