6JZS
Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Abietoyl-L-Tryptophan in complex with Pyridine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-30 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.715, 146.129, 62.481 |
Unit cell angles | 90.00, 96.87, 90.00 |
Refinement procedure
Resolution | 47.330 - 1.680 |
R-factor | 0.1814 |
Rwork | 0.180 |
R-free | 0.20910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wsp |
RMSD bond length | 0.008 |
RMSD bond angle | 2.228 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP (11.6.04) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.330 | 47.290 | 1.710 |
High resolution limit [Å] | 1.680 | 9.200 | 1.680 |
Rmerge | 0.120 | 0.069 | 1.427 |
Rmeas | 0.130 | 0.076 | 1.580 |
Rpim | 0.050 | 0.030 | 0.669 |
Number of reflections | 118187 | 738 | 5670 |
<I/σ(I)> | 8.1 | 22 | 1.1 |
Completeness [%] | 99.7 | 98.1 | 97.3 |
Redundancy | 6.6 | 5.9 | 5.4 |
CC(1/2) | 0.996 | 0.995 | 0.527 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 293 | PEG8000, Magnesium Chloride, Tris-HCl, 0.5 % DMSO, 125 uM N-Abietoyl-L-Tryptophan, 100 uM Pyridine |