6JZ4
b-glucuronidase from Ruminococcus gnavus in complex with D-glucaro-d-lactam
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13C1 |
Synchrotron site | NSRRC |
Beamline | BL13C1 |
Temperature [K] | 277 |
Detector technology | CCD |
Collection date | 2018-10-16 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 161.210, 101.896, 111.299 |
Unit cell angles | 90.00, 130.90, 90.00 |
Refinement procedure
Resolution | 28.501 - 1.712 |
R-factor | 0.1683 |
Rwork | 0.168 |
R-free | 0.20280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.077 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.770 |
High resolution limit [Å] | 1.710 | 3.680 | 1.710 |
Rmerge | 0.062 | 0.026 | 0.690 |
Rmeas | 0.070 | 0.029 | 0.795 |
Rpim | 0.032 | 0.012 | 0.387 |
Total number of observations | 696402 | ||
Number of reflections | 178565 | 14659 | 14165 |
<I/σ(I)> | 13.9 | ||
Completeness [%] | 99.0 | 99.3 | 97.9 |
Redundancy | 4.8 | 5.1 | 4.2 |
CC(1/2) | 0.999 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 70% MPD, 0.1 M HEPES, pH 7.5, 0.2 M CaCl2 |