6JVC
Structure of the Cobalt Protoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Abietoyl-L-Tryptophan
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.898, 148.247, 63.219 |
Unit cell angles | 90.00, 98.02, 90.00 |
Refinement procedure
Resolution | 47.870 - 1.750 |
R-factor | 0.1874 |
Rwork | 0.186 |
R-free | 0.22030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wsp |
RMSD bond length | 0.011 |
RMSD bond angle | 2.033 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP (11.6.02) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.420 | 49.420 | 1.780 |
High resolution limit [Å] | 1.750 | 9.590 | 1.750 |
Rmerge | 0.116 | 0.049 | 1.529 |
Rmeas | 0.126 | 0.053 | 1.651 |
Rpim | 0.049 | 0.021 | 0.616 |
Number of reflections | 107592 | 690 | 5354 |
<I/σ(I)> | 8.9 | 25 | 1.2 |
Completeness [%] | 99.8 | 99.4 | 100 |
Redundancy | 6.7 | 6.4 | 7.1 |
CC(1/2) | 0.995 | 0.996 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 293 | PEG8000, Magnesium Chloride, Tris-HCl, 0.5% DMSO, 125 uM N-Abietoyl-L-Tryptophan |