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6JUV

Crytsal structure of ScpB derived from Pyrococcus yayanosii

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]100
Detector technologyCCD
Collection date2018-07-24
DetectorADSC QUANTUM 315r
Wavelength(s)0.9794
Spacegroup nameP 41 2 2
Unit cell lengths92.300, 92.300, 111.817
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution92.300 - 3.043
R-factor0.2387
Rwork0.236
R-free0.26490
Structure solution methodSAD
RMSD bond length0.002
RMSD bond angle0.495
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX (1.10.1_2155)
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]92.3003.250
High resolution limit [Å]3.0403.040
Rmerge0.1710.386
Rmeas0.1720.387
Rpim0.0170.035
Number of reflections98021721
<I/σ(I)>34.320.2
Completeness [%]100.0100
Redundancy113.1118.9
CC(1/2)0.9990.998
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.529535% (v/v) pentaerythritol propoxylate (5/4 PO/OH), 0.1M MES (pH 5.5), 0.4M sodium chloride
1VAPOR DIFFUSION, HANGING DROP5.529535% (v/v) pentaerythritol propoxylate (5/4 PO/OH), 0.1M MES (pH 5.5), 0.4M sodium chloride

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PDB entries from 2024-07-24

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