6JTO
Crystal structure of HLA-C05 in complex with a tumor mut10m peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2017-11-20 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.360, 76.330, 84.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.678 - 1.700 |
R-factor | 0.1799 |
Rwork | 0.179 |
R-free | 0.20810 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.883 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.678 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.027 | 0.189 |
Number of reflections | 49991 | 4913 |
<I/σ(I)> | 10.84 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 2 | 2 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.2M ammonium acetate, 0.1M HEPES (pH 7.5), 25% w/v polyethylene glycol 3350 |