6JPI
Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-28 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.800, 90.700, 91.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.350 - 3.143 |
R-factor | 0.2218 |
Rwork | 0.215 |
R-free | 0.28080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3trb |
RMSD bond length | 0.013 |
RMSD bond angle | 1.507 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.230 |
High resolution limit [Å] | 3.140 | 3.140 |
Rmerge | 0.109 | 0.685 |
Rmeas | 0.120 | 0.754 |
Number of reflections | 11506 | 807 |
<I/σ(I)> | 11.2 | 1.1 |
Completeness [%] | 98.3 | 94.3 |
Redundancy | 6.6 | 3.8 |
CC(1/2) | 0.990 | 0.978 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 293 | 0.1M MES, 35% 3-methyl-1,5-pentane diol, 0.2M lithium sulfate |