6JJF
Crystal structure of a two-quartet DNA mixed-parallel/antiparallel G-quadruplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I23 |
Synchrotron site | Diamond |
Beamline | I23 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-21 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 1.5895 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 45.370, 47.600, 37.730 |
Unit cell angles | 90.00, 110.02, 90.00 |
Refinement procedure
Resolution | 23.800 - 1.470 |
R-factor | 0.1924 |
Rwork | 0.192 |
R-free | 0.19920 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | HKL2Map |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.800 | 2.260 | 1.420 |
High resolution limit [Å] | 1.470 | 2.190 | 1.400 |
Rmerge | 0.036 | 0.163 | 2.179 |
Number of reflections | 12704 | 286 | 1480 |
<I/σ(I)> | 17.7 | 11.4 | 1 |
Completeness [%] | 98.0 | 86.4 | |
Redundancy | 6.4 | ||
CC(1/2) | 0.998 | 0.975 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 283 | Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 283 | Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 283 | Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD |