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6JJF

Crystal structure of a two-quartet DNA mixed-parallel/antiparallel G-quadruplex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I23
Synchrotron siteDiamond
BeamlineI23
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-21
DetectorDECTRIS PILATUS 12M
Wavelength(s)1.5895
Spacegroup nameC 1 2 1
Unit cell lengths45.370, 47.600, 37.730
Unit cell angles90.00, 110.02, 90.00
Refinement procedure
Resolution23.800 - 1.470
R-factor0.1924
Rwork0.192
R-free0.19920
Structure solution methodSAD
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareHKL2Map
Refinement softwarePHENIX (1.13)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]23.8002.2601.420
High resolution limit [Å]1.4702.1901.400
Rmerge0.0360.1632.179
Number of reflections127042861480
<I/σ(I)>17.711.41
Completeness [%]98.086.4
Redundancy6.4
CC(1/2)0.9980.9750.668
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5283Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD
1VAPOR DIFFUSION, HANGING DROP6.5283Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD
1VAPOR DIFFUSION, HANGING DROP6.5283Potassium cacodylate, Sodium cacodylate, Potassium chloride, Sodium chloride, Lithium chloride, Hexammine cobalt (III) chloride, MPD

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PDB entries from 2024-11-06

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