6JIP
Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA dT6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | I 41 |
Unit cell lengths | 66.383, 66.383, 42.143 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.940 - 1.659 |
R-factor | 0.1948 |
Rwork | 0.194 |
R-free | 0.21490 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.690 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.720 |
High resolution limit [Å] | 1.659 | 3.580 | 1.660 |
Rmerge | 0.058 | 0.049 | 0.419 |
Rmeas | 0.063 | 0.054 | 0.464 |
Rpim | 0.025 | 0.022 | 0.195 |
Number of reflections | 10917 | 1126 | 1043 |
<I/σ(I)> | 7.1 | ||
Completeness [%] | 99.5 | 99.7 | 97.2 |
Redundancy | 6.2 | 6.1 | 5.3 |
CC(1/2) | 0.998 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.8 | 289 | PEG 3350 |