6JHY
Crystal Structure of the S1 subunit N-terminal domain from DcCoV UAE-HKU23 spike protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-22 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 123.587, 46.885, 75.734 |
Unit cell angles | 90.00, 122.64, 90.00 |
Refinement procedure
Resolution | 32.610 - 2.500 |
R-factor | 0.2035 |
Rwork | 0.201 |
R-free | 0.25570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h14 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.156 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AMoRE |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.610 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rpim | 0.058 | 0.147 |
Number of reflections | 14536 | |
<I/σ(I)> | 14.826 | |
Completeness [%] | 99.5 | |
Redundancy | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 1.5 M Ammonium sulfate, and 0.1 M Sodium acetate trihydrate, pH 7.5 |