6JEX
K4U bound crystal peptide deformylase from Acinetobacter baumanii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97950 |
Spacegroup name | P 32 |
Unit cell lengths | 40.176, 40.176, 187.645 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.990 - 2.110 |
R-factor | 0.2011 |
Rwork | 0.197 |
R-free | 0.27210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jer |
RMSD bond length | 0.016 |
RMSD bond angle | 1.894 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.105 | 0.073 | 0.316 |
Rmeas | 0.129 | 0.091 | 0.389 |
Rpim | 0.075 | 0.053 | 0.225 |
Number of reflections | 19227 | 862 | 940 |
<I/σ(I)> | 21.8 | ||
Completeness [%] | 98.2 | 87.8 | 100 |
Redundancy | 2.8 | 2.7 | 2.8 |
CC(1/2) | 0.977 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 287 | 0.03 M MgCl2, 0.03 M CaCl2, 15% (v/v) PEGMME, 15% (w/v) PEG 20000, 0.1 M Tris (base)/ Bicine pH 8.5 |