6JDB
Crystal structure of N-acetyl mannosmaine kinase in complex with ManNAc-6P and ADP from Haemophilus influenzae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97857 A |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 92.591, 92.591, 183.321 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.280 - 2.650 |
R-factor | 0.2165 |
Rwork | 0.213 |
R-free | 0.27560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jda |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3211: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.300 | 46.300 | 2.770 |
High resolution limit [Å] | 2.640 | 8.770 | 2.640 |
Rmerge | 0.094 | 0.032 | 0.947 |
Rmeas | 0.104 | 0.037 | 1.035 |
Rpim | 0.043 | 0.017 | 0.412 |
Number of reflections | 12021 | 386 | 1528 |
<I/σ(I)> | 11.9 | ||
Completeness [%] | 99.6 | 98.3 | 98 |
Redundancy | 5.9 | 4.8 | 6.2 |
CC(1/2) | 0.998 | 0.999 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 0.2M Ammonium phosphate monobasic, 0.1M Tris pH 8.5, 50% v/v MPD |