6JCH
Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Orthorhombic form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-18 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97947 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.382, 63.523, 130.245 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.736 - 1.536 |
R-factor | 0.1816 |
Rwork | 0.180 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jbv |
RMSD bond length | 0.006 |
RMSD bond angle | 0.847 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.094 | 1.562 |
High resolution limit [Å] | 1.536 | 1.536 |
Rmerge | 0.046 | 0.501 |
Rmeas | 0.049 | 0.568 |
Rpim | 0.019 | 0.261 |
Number of reflections | 52018 | 2453 |
<I/σ(I)> | 21.3 | 2.3 |
Completeness [%] | 99.7 | 96.7 |
Redundancy | 6.8 | 4.4 |
CC(1/2) | 0.999 | 0.832 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 295 | 0.1 M bis-tris propane pH 8.5, 0.25 M sodium formate, 25% (w/v) PEG 3350, 0.2 M sodium iodide, 0.02 M L-proline |