6J5F
Complex structure of MAb 4.2-scFv with tick-borne encephalitis virus envelope protein Domain III
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 92.668, 95.461, 99.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.954 - 1.801 |
R-factor | 0.18 |
Rwork | 0.179 |
R-free | 0.19240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1svb 5grj |
RMSD bond length | 0.010 |
RMSD bond angle | 0.871 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.103 | |
Number of reflections | 41293 | 4076 |
<I/σ(I)> | 27.6 | 9.4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 12.7 | 11.2 |
CC(1/2) | 0.998 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 1% w/v tryptone, 0.05M HEPES sodium pH 7.0, 20% w/v PEG 3350 |