6IZZ
The RNA-dependent RNA polymerase domain of dengue 3 NS5, bound with RK-0404678
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-13 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 164.040, 179.290, 58.270 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.153 - 1.970 |
R-factor | 0.2246 |
Rwork | 0.223 |
R-free | 0.25520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2j7u |
RMSD bond length | 0.005 |
RMSD bond angle | 0.725 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.670 | 2.020 |
High resolution limit [Å] | 1.970 | 1.970 |
Number of reflections | 60863 | 4487 |
<I/σ(I)> | 13.8 | |
Completeness [%] | 99.4 | |
Redundancy | 7.3 | |
CC(1/2) | 0.998 | 0.609 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 16% polyethylene glycol 10000 and 100 mM Tris-HCl (pH 8.0) |