6IYE
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with 12% PEG 1500 at 1.55 A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-08 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.96600 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.795, 65.849, 75.746 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.900 - 1.550 |
R-factor | 0.25381 |
Rwork | 0.253 |
R-free | 0.27691 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5y9a |
RMSD bond length | 0.011 |
RMSD bond angle | 1.637 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.900 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.110 | 0.560 |
Rmeas | 0.138 | 0.660 |
Rpim | 0.068 | 0.330 |
Number of reflections | 25090 | |
<I/σ(I)> | 5.9 | 2.2 |
Completeness [%] | 92.1 | |
Redundancy | 3.78 | |
CC(1/2) | 0.987 | 0.692 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 12% PEG 1500, 0.1M HEPES PH 7.5 |