Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6IYA

Structure of the DNA binding domain of antitoxin CopASO

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.979
Spacegroup nameP 21 2 21
Unit cell lengths58.541, 60.949, 105.098
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.220 - 3.000
R-factor0.2493
Rwork0.247
R-free0.29810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gpe
RMSD bond length0.002
RMSD bond angle0.583
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.110
High resolution limit [Å]3.0003.000
Rmerge0.0880.782
Rmeas0.0980.873
Rpim0.0420.378
Number of reflections7302729
<I/σ(I)>15.72.2
Completeness [%]90.492.2
Redundancy4.84.6
CC(1/2)0.9740.949
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2790.2 M Sodium formate, 20% w/v Polyethylene glycol 3350

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon