6IVH
Crystal structure of the N-terminal domain of ScpA derived from Thermococcus onnurineus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 61 |
Unit cell lengths | 76.984, 76.984, 39.934 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.492 - 2.500 |
R-factor | 0.2416 |
Rwork | 0.239 |
R-free | 0.25890 |
Structure solution method | SAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.732 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.780 | 2.500 |
Rmerge | 0.079 | 0.054 | 0.279 |
Rmeas | 0.084 | 0.056 | 0.324 |
Rpim | 0.028 | 0.017 | 0.159 |
Number of reflections | 8911 | 460 | 412 |
<I/σ(I)> | 15.6 | ||
Completeness [%] | 97.2 | 99.6 | 89.6 |
Redundancy | 6.7 | 10.8 | 3 |
CC(1/2) | 0.999 | 0.327 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | crystal growth at 3.5 M sodium formate and 0.1 M sodium malonate, dehydration for 2 h in the reservoir solution containing additional 10% glycerol |