6IU5
Crystal structure of cytoplasmic metal binding domain with zinc ions
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-05-23 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 1.282 |
| Spacegroup name | P 31 |
| Unit cell lengths | 84.942, 84.942, 98.190 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 42.510 - 2.250 |
| R-factor | 0.19993 |
| Rwork | 0.198 |
| R-free | 0.25002 |
| Structure solution method | SAD |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.589 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | AutoSol |
| Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.471 | 42.479 | 2.330 |
| High resolution limit [Å] | 2.250 | 4.845 | 2.250 |
| Rmerge | 0.144 | 0.105 | 1.190 |
| Rmeas | 0.165 | ||
| Rpim | 0.080 | ||
| Total number of observations | 316698 | ||
| Number of reflections | 37519 | 3766 | 3727 |
| <I/σ(I)> | 5.5282 | 12.8067 | 0.9053 |
| Completeness [%] | 99.8 | ||
| Redundancy | 4.1795 | 4.2716 | 3.7116 |
| CC(1/2) | 0.990 | 0.989 | 0.386 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 21-23% PEG600, 0.1 M HEPES pH7.0 and 0.001-0.003 M zinc cloride |
