6ITD
Crystal structure of BioU (K124A) from Synechocystis sp.PCC6803 in complex with the analog of reaction intermediate, 3-(1-aminoethyl)-nonanedioic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-17 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 71.167, 71.167, 98.211 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 61.630 - 2.000 |
R-factor | 0.19033 |
Rwork | 0.187 |
R-free | 0.24883 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ir4 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.238 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.630 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.091 | 0.588 |
Rpim | 0.035 | 0.203 |
Number of reflections | 19876 | 981 |
<I/σ(I)> | 31.9 | |
Completeness [%] | 99.9 | |
Redundancy | 8.7 | |
CC(1/2) | 0.998 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 20% (w/v) polyethylene glycol 3350, 0.2 M ammonium acetate, 5mM 3-(1-aminoethyl)-nonanedioic acid |