6IOX
Crystal structure of Porphyromonas gingivalis phosphotransacetylase in complex with acetyl-CoA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-05-28 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 95.693, 130.023, 52.602 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.450 - 2.040 |
R-factor | 0.19868 |
Rwork | 0.197 |
R-free | 0.23769 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2af4 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.523 |
Data reduction software | DIALS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.450 | 2.070 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.092 | 0.227 |
Number of reflections | 42700 | 2061 |
<I/σ(I)> | 16.93 | 5.5 |
Completeness [%] | 100.0 | 99.1 |
Redundancy | 12.6 | 11.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 20% (w/v) polyethylene glycol (PEG) 3350 and 0.2 M ammonium tartrate dibasic |