6IOJ
Glyceraldehyde-3-phosphate dehydrogenase A (apo-form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97917 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 120.890, 120.890, 156.070 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.741 - 2.290 |
R-factor | 0.192 |
Rwork | 0.191 |
R-free | 0.22110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gad |
Data reduction software | xia2 |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER (2.7.2) |
Refinement software | PHENIX ((1.14_3260:000)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.790 | 47.790 | 2.350 |
High resolution limit [Å] | 2.290 | 10.240 | 2.290 |
Rmerge | 0.109 | 0.054 | 1.602 |
Rmeas | 0.111 | 0.055 | 1.633 |
Rpim | 0.022 | 0.012 | 0.314 |
Number of reflections | 26233 | 350 | 1910 |
<I/σ(I)> | 19.2 | ||
Completeness [%] | 99.6 | 98.8 | 99.9 |
Redundancy | 25.6 | 21.3 | 26.5 |
CC(1/2) | 0.999 | 0.998 | 0.777 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | 0.15M Malic acid, PEG3350 25% |