6IFG
Crystal structure of M1 zinc metallopeptidase E323A mutant bound to Tyr-ser-ala substrate from Deinococcus radiodurans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-07-28 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 0.979470 |
Spacegroup name | P 1 |
Unit cell lengths | 51.598, 57.594, 69.321 |
Unit cell angles | 89.77, 82.14, 67.80 |
Refinement procedure
Resolution | 24.137 - 1.900 |
R-factor | 0.1821 |
Rwork | 0.180 |
R-free | 0.21420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6a8z |
RMSD bond length | 0.005 |
RMSD bond angle | 0.796 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.830 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.052 | 0.352 |
Rmeas | 0.065 | 0.446 |
Rpim | 0.039 | 0.269 |
Number of reflections | 56301 | 3603 |
<I/σ(I)> | 14.2 | 3.2 |
Completeness [%] | 97.7 | 96.3 |
Redundancy | 2.7 | 2.7 |
CC(1/2) | 0.997 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.5 | 294 | 0.2M Ammonium formate, 0.1M Bis-tris pH 5.5, 25% PEG 3350 |