6I8G
Structure of the plant immune signaling node EDS1 (enhanced disease susceptibility 1) in complex with nanobody ENB73
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-28 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967700 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 177.504, 68.232, 105.273 |
Unit cell angles | 90.00, 123.44, 90.00 |
Refinement procedure
Resolution | 52.570 - 2.344 |
R-factor | 0.195 |
Rwork | 0.194 |
R-free | 0.22200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nfu |
RMSD bond length | 0.002 |
RMSD bond angle | 0.522 |
Data reduction software | XDS (VERSION Jan 26, 2018) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.773 | 2.565 |
High resolution limit [Å] | 2.344 | 2.344 |
Rmerge | 0.117 | 0.870 |
Number of reflections | 31550 | 1577 |
<I/σ(I)> | 8 | 1.5 |
Completeness [%] | 71.1 | 15.1 |
Redundancy | 3.6 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | Reservoir composition: 17.5 % (w/v) PEG3350, 0.2 M sodium citrate, 0.1 M Bis-Tris buffer, pH 8.5; Protein stock solution: 2.8 mg/ml protein in 50 mM sodium chloride, 1 % (v/v) glycerole, 1mM DTT, 50 mM HEPES, pH 8.0; drop composition: 1 mikroliter protein stock solution + 1 mikroliter reservoir solution; crystals were cryoprotected in 17.5 % (w/v) PEG3350, 20 % (v/v) ethylene glycol, 0.2 M sodium citrate, 0.1 M Bis-Tris buffer, pH 8.5. |