6HSA
The crystal structure of type II Dehydroquinase from Butyrivibrio crossotus DSM 2876
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.826560 |
Spacegroup name | H 3 |
Unit cell lengths | 79.476, 79.476, 72.033 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.930 - 0.920 |
R-factor | 0.1022 |
Rwork | 0.101 |
R-free | 0.11980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hs9 |
RMSD bond length | 0.015 |
RMSD bond angle | 2.040 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.930 | 31.911 | 0.939 |
High resolution limit [Å] | 0.920 | 2.504 | 0.923 |
Rmerge | 0.046 | 0.038 | 0.331 |
Rmeas | 0.045 | 0.426 | |
Rpim | 0.030 | 0.024 | 0.265 |
Number of reflections | 112975 | 5387 | 5054 |
<I/σ(I)> | 14.1 | 29.6 | 2.6 |
Completeness [%] | 96.7 | 92.1 | 85.9 |
Redundancy | 3.2 | 3.2 | 2.2 |
CC(1/2) | 0.997 | 0.996 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 20% PEG 4000, 0.2M Ammonium sulfate, 0.1M sodium citrate pH 5.6 |