6HJD
Cholera toxin classical B-pentamer in complex with Lewis-x
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.977021 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.965, 108.291, 115.621 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.160 - 1.540 |
R-factor | 0.19411 |
Rwork | 0.193 |
R-free | 0.22355 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5elb |
RMSD bond length | 0.015 |
RMSD bond angle | 1.686 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.970 | 1.570 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmeas | 0.117 | 0.907 |
Number of reflections | 153937 | 7547 |
<I/σ(I)> | 8.9 | 1.7 |
Completeness [%] | 99.9 | 99.5 |
Redundancy | 6.5 | 6.4 |
CC(1/2) | 0.984 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.15 | 0.1 M Bicine-Tris, 8% PEG1000, 8% PEG3350, 8% MPD, 0.03 M calcium chloride, 0.03 M magnesium chloride |