6HFD
Human dihydroorotase mutant F1563L apo structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.560, 158.770, 60.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.693 - 1.870 |
R-factor | 0.133602038053 |
Rwork | 0.132 |
R-free | 0.16698 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c6c |
RMSD bond length | 0.005 |
RMSD bond angle | 0.890 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.550 | 1.900 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmeas | 0.089 | 0.686 |
Number of reflections | 62727 | 2507 |
<I/σ(I)> | 17.8 | 3.8 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 6.5 | 6.6 |
CC(1/2) | 0.999 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | Protein at 2-3 mg/ml in 20 mM Tris pH 8, 0.15 M NaCl, 0.02 mM zinc sulfate, 0.2 mM TCEP Mother liquor: 2.5-3 M potassium formate, 0.1 M HEPES pH 7 |